miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Drosophila pseudoobscura



ABOUT THIS RECORD

ID: MNEST036910
species: Drosophila pseudoobscura
miRNA family: mir-6
source: miRBase, original name: dps-mir-6-3 (MI0001300)

Taxonomy by NCBI:
Drosophila pseudoobscura pseudoobscura subgroup obscura group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TATCACAGTGGCTGTTCTTTTT

miRNA*
AGGGAACGGTTGCTGCTGATGTA

mismatches: 2
bulges: 1

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pre-miRNA
CAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCAAGTTTTGCACAATTTATATCACAGTGGCTGTTCTTTTTTGTTTG

dot-bracket secondary structure
((((.(((((((((((((..(((.((((((((.....(.....).....)))))))))))..))))))))))))).))))


SIMILARITIES
miRBase dpe-mir-6-2: 9e-38

PMRD no hits

microPC no hits
UniProt no hits

RFAM mir-6: 6e-36

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
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